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SAM tools

4.6 Stars (31)
1,828 Downloads (This Week)
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Description

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format.

The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools

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User Ratings

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features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5
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support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 3 / 5
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User Reviews

  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    A core component of many a bioinformatics pipeline

    Posted 01/30/2014
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Error: $./samtools: /lib64/libz.so.1: version `ZLIB_1.2.3.3' not found (required by ./samtools) How can I fix this problem? THX

    Posted 12/18/2013
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Brilliant idea, code is not robust. Doesn't check return status of malloc, other libraries. One shouldn't have to use gdb to understand an expected error.

    Posted 11/06/2013
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Nice, thank you

    Posted 06/26/2013
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Wonderful project! Thanks for amazing work!

    Posted 04/07/2013
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Additional Project Details

Intended Audience

Science/Research, Developers

User Interface

Command-line, Curses/Ncurses

Programming Language

Perl, C

Registered

2008-11-25

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