| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| README.txt | 2013-01-28 | 1.9 kB | |
| SAMMate-2.7.4_Win64.zip | 2012-11-10 | 89.6 MB | |
| SAMMate-2.7.4_Mac64.zip | 2012-11-10 | 94.0 MB | |
| SAMMate-2.7.4_Linux64.tar.gz | 2012-11-10 | 5.4 MB | |
| Totals: 4 Items | 189.0 MB | 1 | |
========================================================= = SAMMate 2.7.4 release = ========================================================= New features: . SASeq's output format has been updated to include a new RPKM field. . Gene expression (RPKM/FPKM) is now calculated by summing over the expression values of all isoforms for each gene. . The edgeR function is compatiple with R-2.15.2. The "Path of Rscript.exe" can be set to "C:\Program Files\R\R-2.15.2\bin\Rscript.exe" to call R-2.15.2. For MAC, the field can be set to /usr/bin/Rscript to call R Bug fixes . The edgeR input is now normalized using the R function calcNormFactors. ========================================================= = SAMMate 2.7.3 release = ========================================================= New features: . SASeq is improved by using paired-end reads. ========================================================= = SAMMate 2.7.2 release = ========================================================= New features: . RAEM transcript quantification procedure is now able to process junction reads. . The read count information has been improved using junction reads. ========================================================= = SAMMate 2.7.1 release = ========================================================= New features: . SASeq is now able to process junction reads. . SASeq is now able to process alignment with insertion/deletion Bug fixes: . Fixed edgeR functionality, SAMMate is now compatible with R 2.14 ========================================================= = SAMMate 2.7 release = ========================================================= New features: . New algorithm SASeq for both oneStep and iterative procedures. . Remove iQuant algorithm from the package Bug fixes: . Fixed SAM parsing