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SAMMate-2.6.1-macos-10.5-i386.zip 2011-05-28 103.9 MB
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SAMMate-2.6.1-macos-10.5-x86_64.zip 2011-05-28 103.9 MB
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SAMMate-2.6.1-win32.zip 2011-05-28 99.8 MB
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SAMMate-2.6.1-linux-i386.tar.gz 2011-05-28 105.1 MB
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SAMMate-2.6.1-linux-x86_64.tar.gz 2011-05-28 105.0 MB
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Totals: 5 Items   517.9 MB 0 
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=	   SAMMate 2.7.4 release 	  		=
=========================================================
New features: 
* SASeq's output format has been updated to include a new RPKM field.
* The edgeR function is compatiple with R-2.15.2. The "Path of Rscript.exe" can be set to "C:\Program Files\R\R-2.15.2\bin\Rscript.exe" to call R-2.15.2.
* For MAC, the field can be set to /usr/bin/Rscript to call R.
* SASeq transcriptome quantificaiton algorithm now processes paired-end and junction reads.
* RAEM transcript quantification algorithm now processes junction reads.
* The read count information has been improved using junction reads.

Bug fixes
* The edgeR input is now normalized using the R function calcNormFactors.
* Fixed edgeR functionality, SAMMate is now compatible with R 2.14

=========================================================
=	   SAMMate 2.7 release 	  		        =
=========================================================
New features: 
* New algorithm SASeq for both oneStep and iterative procedures.
* Deprecate iQuant algorithm (replaced with SASeq algorithm). 

Bug fixes:
* Fixed SAM parsing
Source: README.txt, updated 2013-02-14