Name | Modified | Size | Downloads / Week |
---|---|---|---|
Parent folder | |||
SAMMate 2.5 - Win OS.zip | 2011-04-03 | 52.4 MB | |
SAMMate 2.5 - Mac OS.zip | 2011-04-03 | 52.6 MB | |
Totals: 2 Items | 105.0 MB | 0 |
========================================================= = SAMMate 2.7.4 release = ========================================================= New features: * SASeq's output format has been updated to include a new RPKM field. * The edgeR function is compatiple with R-2.15.2. The "Path of Rscript.exe" can be set to "C:\Program Files\R\R-2.15.2\bin\Rscript.exe" to call R-2.15.2. * For MAC, the field can be set to /usr/bin/Rscript to call R. * SASeq transcriptome quantificaiton algorithm now processes paired-end and junction reads. * RAEM transcript quantification algorithm now processes junction reads. * The read count information has been improved using junction reads. Bug fixes * The edgeR input is now normalized using the R function calcNormFactors. * Fixed edgeR functionality, SAMMate is now compatible with R 2.14 ========================================================= = SAMMate 2.7 release = ========================================================= New features: * New algorithm SASeq for both oneStep and iterative procedures. * Deprecate iQuant algorithm (replaced with SASeq algorithm). Bug fixes: * Fixed SAM parsing