Name | Modified | Size | Downloads / Week |
---|---|---|---|
Parent folder | |||
SAMMate-1.0-beta2.2-WIN.zip | 2010-04-16 | 42.0 MB | |
SAMMate-1.0-beta2.2-MacOS.zip | 2010-04-16 | 26.1 MB | |
Totals: 2 Items | 68.1 MB | 0 |
========================================================= = SAMMate 2.7.4 release = ========================================================= New features: * SASeq's output format has been updated to include a new RPKM field. * The edgeR function is compatiple with R-2.15.2. The "Path of Rscript.exe" can be set to "C:\Program Files\R\R-2.15.2\bin\Rscript.exe" to call R-2.15.2. * For MAC, the field can be set to /usr/bin/Rscript to call R. * SASeq transcriptome quantificaiton algorithm now processes paired-end and junction reads. * RAEM transcript quantification algorithm now processes junction reads. * The read count information has been improved using junction reads. Bug fixes * The edgeR input is now normalized using the R function calcNormFactors. * Fixed edgeR functionality, SAMMate is now compatible with R 2.14 ========================================================= = SAMMate 2.7 release = ========================================================= New features: * New algorithm SASeq for both oneStep and iterative procedures. * Deprecate iQuant algorithm (replaced with SASeq algorithm). Bug fixes: * Fixed SAM parsing