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Home / BED / fly_D.melanogaster
Name Modified Size InfoDownloads / Week
Parent folder
dm6_Ensembl.Dec_14_2021.bed.gz 2021-12-15 1.1 MB
0
dm6_RefSeq_All.Dec_14_2021.bed.gz 2021-12-15 1.0 MB
0
dm6_RefSeq.All.bed.gz 2019-07-18 1.0 MB
0
dm3_RefSeq.bed.gz 2014-08-06 1.0 MB
0
dm3_flyBase.bed.gz 2014-08-06 705.1 kB
0
dm3_Ensembl.bed.gz 2014-08-06 890.2 kB
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Totals: 6 Items   5.8 MB 0 
BED format gene annotations for Human, Mouse, Fly, Zebrafish genome.

To get the most recent annotation and gene models for other species, use UCSC's Table Browser <https://genome.ucsc.edu/cgi-bin/hgTables?command=start>

Human house keeping genes were download from: http://www.tau.ac.il/~elieis/HKG/
Mouse house keeping genes were converted from human house keeping genes based on NCBI homolog maps (http://www.ncbi.nlm.nih.gov/projects/homology/maps/)
Mouse ribosome RNA (rRNA) transcript IDs were extracted from GENCODE annotation (https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M29/gencode.vM29.annotation.gtf.gz). 

Cancer gene symbols (n = 615) were downloaded from: https://cancer.sanger.ac.uk/census (Feb 15, 2017). And then the GENCODE transcripts of these cancer genes were downloaded from UCSC table browser.

Updated on 6/23/2022
Source: README.txt, updated 2022-06-23