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Home / BED / Zebrafish_Danio_rerio
Name Modified Size InfoDownloads / Week
Parent folder
danRer11_RefSeq_All.bed.gz 2024-02-08 3.4 MB
0
danRer11_RefSeq_Curated.bed.gz 2024-02-08 1.2 MB
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danRer11_RefSeq_Predicted.bed.gz 2024-02-08 2.3 MB
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danRer11_RefSeq_All.Dec_14_2021.bed.gz 2021-12-15 3.4 MB
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danRer11_Ensembl.Dec_14_2021.bed.gz 2021-12-15 3.0 MB
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danRer7_Ensembl.bed.gz 2014-08-06 2.8 MB
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danRer7_RefSeq.bed.gz 2014-08-06 931.7 kB
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danRer7_ZGC.bed.gz 2014-08-06 905.7 kB
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Totals: 8 Items   17.9 MB 0 
BED format gene annotations for Human, Mouse, Fly, Zebrafish genome.

To get the most recent annotation and gene models for other species, use UCSC's Table Browser <https://genome.ucsc.edu/cgi-bin/hgTables?command=start>

Human house keeping genes were download from: http://www.tau.ac.il/~elieis/HKG/
Mouse house keeping genes were converted from human house keeping genes based on NCBI homolog maps (http://www.ncbi.nlm.nih.gov/projects/homology/maps/)
Mouse ribosome RNA (rRNA) transcript IDs were extracted from GENCODE annotation (https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M29/gencode.vM29.annotation.gtf.gz). 

Cancer gene symbols (n = 615) were downloaded from: https://cancer.sanger.ac.uk/census (Feb 15, 2017). And then the GENCODE transcripts of these cancer genes were downloaded from UCSC table browser.

Updated on 6/23/2022
Source: README.txt, updated 2022-06-23