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Home / BED / Mouse_Mus_musculus
Name Modified Size InfoDownloads / Week
Parent folder
GRCm39_RefSeq_All.bed.gz 2024-11-22 5.1 MB
2 2 weekly downloads
GRCm39_GENCODE_VM36.bed.gz 2024-11-22 9.4 MB
5 5 weekly downloads
GRCm39_RefSeq_Curated.bed.gz 2024-11-22 2.4 MB
1 1 weekly downloads
mm10_GENCODE_VM25_basic.bed.gz 2024-11-22 3.2 MB
0
mm10_GENCODE_VM25_comprehensive.bed.gz 2024-11-22 5.5 MB
2 2 weekly downloads
GRCm39_GENCODE_VM34_Comprehensive.bed.gz 2024-11-22 5.6 MB
0
GRCm39_GENCODE_VM34_Basic.bed.gz 2024-11-22 3.3 MB
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GRCm39_GENCODE_VM33_Comprehensive.bed.gz 2024-02-08 5.6 MB
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GRCm39_GENCODE_VM33_Basic.bed.gz 2024-02-08 3.3 MB
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GRCm39_GENCODE_VM27.bed.gz 2022-06-23 5.8 MB
0
GRCm39_GENCODE_VM27_rRNAs.bed.gz 2022-06-23 7.3 kB
0
mm10_RefSeq.bed.gz 2021-12-13 4.5 MB
2 2 weekly downloads
mm9_UCSC_knownGene.bed.gz 2018-11-05 2.4 MB
0
mm9_Ensembl_gene.bed.gz 2018-11-05 4.2 MB
0
mm9_MGC_gene.bed.gz 2018-11-05 1.3 MB
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mm9_RefSeq.bed.gz 2018-11-05 2.0 MB
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mm10_Gencode_VM18.bed.gz 2018-11-05 3.1 MB
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mm10_MGC_gene.bed.gz 2018-11-05 1.3 MB
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mm10_UCSC_knownGene.bed.gz 2017-02-14 2.6 MB
2 2 weekly downloads
mm9_rRNA.bed.gz 2015-07-08 27.0 kB
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mm10_rRNA.bed.gz 2015-07-08 26.8 kB
5 5 weekly downloads
mm9.HouseKeepingGenes.bed.gz 2015-02-11 243.5 kB
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mm10.HouseKeepingGenes.bed.gz 2015-02-11 243.3 kB
1 1 weekly downloads
Totals: 23 Items   71.1 MB 20 
BED format gene annotations for Human, Mouse, Fly, Zebrafish genome.

To get the most recent annotation and gene models for other species, use UCSC's Table Browser <https://genome.ucsc.edu/cgi-bin/hgTables?command=start>

Human house keeping genes were download from: http://www.tau.ac.il/~elieis/HKG/
Mouse house keeping genes were converted from human house keeping genes based on NCBI homolog maps (http://www.ncbi.nlm.nih.gov/projects/homology/maps/)
Mouse ribosome RNA (rRNA) transcript IDs were extracted from GENCODE annotation (https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M29/gencode.vM29.annotation.gtf.gz). 

Cancer gene symbols (n = 615) were downloaded from: https://cancer.sanger.ac.uk/census (Feb 15, 2017). And then the GENCODE transcripts of these cancer genes were downloaded from UCSC table browser.

Updated on 6/23/2022
Source: README.txt, updated 2022-06-23