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Home / BED / Human_Homo_sapiens_merge_transcripts
Name Modified Size InfoDownloads / Week
Parent folder
README.txt 2014-12-10 1.1 kB
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hg19.RefSeq.union.transcript_id.txt.gz 2014-12-10 277.1 kB
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hg19.UCSC.union.bed.gz 2014-12-10 1.8 MB
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hg19.UCSC.union.transcript_id.txt.gz 2014-12-10 394.5 kB
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hg38.ENCODE_GENE_V20.union.bed.gz 2014-12-10 2.7 MB
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hg38.ENCODE_GENE_V20.union.transcript_id.txt.gz 2014-12-10 707.6 kB
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hg38.RefSeq.union.bed.gz 2014-12-10 1.8 MB
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hg38.RefSeq.union.transcript_id.txt.gz 2014-12-10 285.1 kB
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hg38.UCSC_knownGene.union.bed.gz 2014-12-10 2.1 MB
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hg38.UCSC_knownGene.union.transcript_id.txt.gz 2014-12-10 460.2 kB
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hg19.Ensembl.union.transcript_id.txt.gz 2014-12-10 918.5 kB
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hg19.RefSeq.union.bed.gz 2014-12-10 1.7 MB
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hg19.ENCODE_GENE.union.transcript_id.txt.gz 2014-12-10 614.6 kB
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hg19.Ensembl.union.bed.gz 2014-12-10 2.7 MB
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hg18.UCSC_knownGene.union.transcript_id.txt.gz 2014-12-10 333.0 kB
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hg19.ENCODE_GENE.union.bed.gz 2014-12-10 2.3 MB
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hg18.RefSeq.union.transcript_id.txt.gz 2014-12-10 275.6 kB
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hg18.UCSC_knownGene.union.bed.gz 2014-12-10 1.9 MB
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hg18.Ensembl.union.transcript_id.txt.gz 2014-12-10 334.6 kB
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hg18.RefSeq.union.bed.gz 2014-12-10 1.7 MB
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hg18.Ensembl.union.bed.gz 2014-12-10 1.9 MB
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Totals: 21 Items   25.2 MB 1 
Transripts will be merged if the following conditions are met (convert "transcript leve" BED file into "gene level" BED file):
1) Have the same gene symbol
2) Locate on the same chromosome and the same strand
3) Genome coordinates are overlapped



*union.bed.gz: "Gene level" BED file, for example:
chr17   42282400        42298994        UBTF    0       -       42284609        42298994        255,0,0 23      2335,144,72,48,190,89,111,156,156,114,42,142,134,111,121,65,156,84,176,125,229,143,426  0,2421,2666,2831,4319,4612,5091,5285,5759,6006,6257,6573,6840,7311,7786,8185,10621,10873,11496,13139,14412,15707,16168
chr18   32556891        32723432        MAPRE2  0       +       32558481        32723432        255,0,0 10      152,298,62,407,128,146,214,140,159,3174 0,1316,28564,64432,93267,120518,125018,150020,155104,163367
	
*union.transcript_id.txt.gz: Correspondence between "gene ID" and "transcript ID", for example:
UBTF    NM_014233,NM_001076683,NM_001076684,NR_045058
MAPRE2  NM_001256420,NM_014268,NM_001143826,NM_001143827,NR_046177
Source: README.txt, updated 2014-12-10