Download Latest Version CPAT-3.0.5.tar.gz (10.9 MB)
Email in envelope

Get an email when there's a new version of CPAT

Home / v1.2.2 / test
Name Modified Size InfoDownloads / Week
Parent folder
Human_coding_transcripts_mRNA.fa.gz 2024-01-25 14.2 MB
0
Human_noncoding_transcripts_RNA.fa.gz 2024-01-25 3.4 MB
0
Human_coding_transcripts_CDS.fa.gz 2024-01-25 7.2 MB
0
Human_coding_transcripts_hg19.bed 2014-08-15 2.8 MB
0
Human_noncoding_transcripts_hg19.bed 2014-08-15 1.1 MB
0
README.txt 2014-08-15 686 Bytes
0
Human_test_coding_mRNA_hg19.bed 2014-08-15 603.4 kB
0
Human_test_noncoding_hg19.bed 2014-08-15 367.0 kB
0
Human_test_noncoding_RNA.fa 2014-08-15 4.3 MB
0
Human_test_coding_mRNA.fa 2014-08-15 12.6 MB
0
Totals: 10 Items   46.5 MB 0 
Files required to build hexamer tabel:
 * Human_coding_transcripts_CDS.fa
 * Human_noncoding_transcripts_RNA.fa


Files required to build logit model:
 * Human_coding_transcripts_mRNA.fa
 * Human_noncoding_transcripts_RNA.fa 
 or
 * Human_coding_transcripts_hg19.bed
 * Human_noncoding_transcripts_hg19.bed
 NOTE: reference genome sequence is required if input bed files
 

Files  required to test CPAT
 * Human_test_coding_mRNA.fa
 * Human_test_noncoding_RNA.fa
 
 or 
 
 * Human_test_coding_mRNA_hg19.bed
 * Human_test_noncoding_hg19.bed
 NOTE: reference genome sequence is required if input bed files
 
Read online manual for detailed instructions:
http://rna-cpat.sourceforge.net/
Source: README.txt, updated 2014-08-15