Name | Modified | Size | Downloads / Week |
---|---|---|---|
Parent folder | |||
Human_coding_transcripts_mRNA.fa.gz | 2024-01-25 | 14.2 MB | |
Human_noncoding_transcripts_RNA.fa.gz | 2024-01-25 | 3.4 MB | |
Human_coding_transcripts_CDS.fa.gz | 2024-01-25 | 7.2 MB | |
Human_coding_transcripts_hg19.bed | 2014-08-15 | 2.8 MB | |
Human_noncoding_transcripts_hg19.bed | 2014-08-15 | 1.1 MB | |
README.txt | 2014-08-15 | 686 Bytes | |
Human_test_coding_mRNA_hg19.bed | 2014-08-15 | 603.4 kB | |
Human_test_noncoding_hg19.bed | 2014-08-15 | 367.0 kB | |
Human_test_noncoding_RNA.fa | 2014-08-15 | 4.3 MB | |
Human_test_coding_mRNA.fa | 2014-08-15 | 12.6 MB | |
Totals: 10 Items | 46.5 MB | 0 |
Files required to build hexamer tabel: * Human_coding_transcripts_CDS.fa * Human_noncoding_transcripts_RNA.fa Files required to build logit model: * Human_coding_transcripts_mRNA.fa * Human_noncoding_transcripts_RNA.fa or * Human_coding_transcripts_hg19.bed * Human_noncoding_transcripts_hg19.bed NOTE: reference genome sequence is required if input bed files Files required to test CPAT * Human_test_coding_mRNA.fa * Human_test_noncoding_RNA.fa or * Human_test_coding_mRNA_hg19.bed * Human_test_noncoding_hg19.bed NOTE: reference genome sequence is required if input bed files Read online manual for detailed instructions: http://rna-cpat.sourceforge.net/