These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in:
Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11).
Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon.
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