Download Latest Version Recombine_v2.1.tar.gz (118.4 MB)
Email in envelope

Get an email when there's a new version of ReCombine

Home
Name Modified Size InfoDownloads / Week
Sample_data 2011-05-19
0
Recombine_v2.1.tar.gz 2014-06-25 118.4 MB
0
README_ReCombine_v2.1.txt 2014-03-07 705 Bytes
0
README_ReCombine_v2.txt 2011-10-27 1.0 kB
0
ReCombine_v2.tar.gz 2011-10-27 118.3 MB
0
ReCombine_manual_v3.2.pdf 2011-08-15 755.6 kB
0
ReCombine.tar.gz 2011-08-15 118.3 MB
0
Totals: 7 Items   355.8 MB 0 
Updates to ReCombine
March 7, 2014

ReadAligner_v2.2 now includes 'readAligner_bioobc.py' which allows the input of individual fastq files for each spore to be analyzed.

In GenotypeCaller_v2.2, the option has been added to let the program choose the quality score threshold used for final genotyping of each spore. In this case, the program tries all thresholds and chooses the one with which the maximum number of final calls is made. It also produces an output file listing the number of markers genotyped at each threshold.

In CrossOver_v6.3, a bug affected the handling of certain NCOs has been fixed. Tract list files now output both sets of SNPs involved in the genotype switch for each CO/GC
Source: README_ReCombine_v2.1.txt, updated 2014-03-07