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RAFTS3

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Rapid Alignment Free Tool for Sequences Similarity Search

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Description

RAFTS3 can perform high-speed protein search comparisons locally using a desktop computer or laptop. RAFTS3 performed searches many times faster than those with BLASTp against large protein databases such as NR and Pfam, with a small loss of sensitivity depending on the similarity
degree of the sequences. RAFTS3 is a new alternative for fast comparison of protein sequences, genome annotation and biological data mining.
Preprint: http://dx.doi.org/10.1101/055269
Precomputed databases evaluated on paper are available for download at http://www.bioinfo.ufpr.br/software/rafts3

RAFTS3 Web Site

Categories

Bio-Informatics

License

BSD License

Features

  • Sequence Comparison
  • Alignment-Free

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Additional Project Details

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

MATLAB

Registered

2014-04-02

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