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RACKJ (Read Analysis & Comparison Kit in Java) is a set of Java programs that analyze 
and compare RNA-seq data made by NGS (Next-Generation Sequencing) technologies. In 
addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts 
for exons and splicing events. In so doing, it is feasible to compare two samples and 
identify genes with most significant difference in exon(splicing)-level. 

Please find usage examples and manual in our website: http://rackj.sourceforge.net/

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CONTENTS
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1. rnaseq.jar: the RACKJ java archive
2. ReleaseNote.txt: release note
3. LICENSE(intervaltree).txt: licence for misc.intervaltree package
4. lgpl.txt: The GNU Lesser General Public License
5. README.txt: this file
6. manual: HTML documents
7. scripts: perl scripts, see documents for description
Source: README.txt, updated 2023-08-16