Download Latest Version quikr-1.0.3.zip (30.0 MB)
Email in envelope

Get an email when there's a new version of Quikr

Home / Quikr / quikr-1.0.3
Name Modified Size InfoDownloads / Week
Parent folder
quikr-1.0.3.zip 2013-06-12 30.0 MB
0
Totals: 1 Item   30.0 MB 0

Quikr

This is the homepage for quikr.

What is Quikr

Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that utilizes sparsity promoting ideas from the field of compressed sensing to reconstruct the composition of a bacterial community (when the input data is 454-like pyrosequencing data). This extremely fast method comes with a several databases that can be custom trained. Typically reconstruction is accurate down to the genus level.

How Do I Install Quikr

Please read the directions on the installation page.

How Do I use Quikr

We have several ways to use quikr. Quikr is first and formost a command line utility, but we also provide python and matlab scripts.

Contact

For issues with the quikr software, contact gailro@gmail.com

Contributors

  • David Koslicki
  • Simon Foucart
  • Gail Rosen
  • Calvin Morrison
  • Jean-Luc Bouchot
Source: README.markdown, updated 2013-05-20