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quikr-1.0.3.zip (30.0 MB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| quikr-1.0.4 | 2014-03-13 | ||
| quikr-1.0.3 | 2013-06-12 | ||
| quikr-1.0.2 | 2013-06-12 | ||
| Totals: 3 Items | 0 | ||
Quikr
This is the homepage for quikr.
What is Quikr
Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that utilizes sparsity promoting ideas from the field of compressed sensing to reconstruct the composition of a bacterial community (when the input data is 454-like pyrosequencing data). This extremely fast method comes with a several databases that can be custom trained. Typically reconstruction is accurate down to the genus level.
How Do I Install Quikr
Please read the directions on the installation page.
How Do I use Quikr
We have several ways to use quikr. Quikr is first and formost a command line utility, but we also provide python and matlab scripts.
Contact
For issues with the quikr software, contact gailro@gmail.com
Contributors
- David Koslicki
- Simon Foucart
- Gail Rosen
- Calvin Morrison
- Jean-Luc Bouchot