Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that utilizes sparsity promoting ideas from the field of compressed sensing to reconstruct the composition of a bacterial community (when the input data is 454-like pyrosequencing data). This extremely fast method comes with a default training database but can be custom trained. Typically reconstruction is accurate down to the genus level.

See the README file for installation directions.
Usage details are in the folder /quikr/doc

Please contact me if there are any concerns/issues.

Thanks and enjoy!

Project Activity

See All Activity >

Follow Quikr

Quikr Web Site

Other Useful Business Software
Simplify IT and security with a single endpoint management platform Icon
Simplify IT and security with a single endpoint management platform

Automate the hardest parts of IT

NinjaOne automates the hardest parts of IT, delivering visibility, security, and control over all endpoints for more than 20,000 customers. The NinjaOne automated endpoint management platform is proven to increase productivity, reduce security risk, and lower costs for IT teams and managed service providers. The company seamlessly integrates with a wide range of IT and security technologies. NinjaOne is obsessed with customer success and provides free and unlimited onboarding, training, and support.
Learn More
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of Quikr!

Additional Project Details

Registered

2012-12-10
Report inappropriate content