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QUAST

Quality Assessment Tool for Genome Assemblies

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Description

QUAST performs fast and convenient quality evaluation and comparison of genome assemblies.

QUAST computes a number of well-known metrics, including contig accuracy, number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and in the manual). A comprehensive analysis results in summary tables (in plain text, tab-separated and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one easy to navigate file.

QUAST has an intuitive command-line interface and a detailed manual to help users run it and understand its output. Furthermore, the Lab started a Beta version of web-QUAST at http://quast.bioinf.spbau.ru/ which makes quality evaluation even more simple.

QUAST and MetaQUAST (extension for metagenomic assemblies) papers were published in Bioinformatics.

QUAST Web Site

Features

  • web-based reports, tables in plain txt, tab-separated and LaTeX formats
  • colorful plots and histograms
  • quality evaluation with and without a reference genome
  • quality evaluation of metagenomic assemblies
  • interactive contig browser

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Additional Project Details

Intended Audience

Science/Research, Developers, End Users/Desktop

User Interface

Web-based, Command-line

Programming Language

Python, JavaScript

Registered

2012-07-27

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