This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.

Features

  • Quasispecies
  • mRNA virus
  • Clustering
  • Semidefinite program
  • HIV-1 virus

Project Activity

See All Activity >

Categories

Bio-Informatics

Follow QSdpR

QSdpR Web Site

Other Useful Business Software
Enterprise-grade ITSM, for every business Icon
Enterprise-grade ITSM, for every business

Give your IT, operations, and business teams the ability to deliver exceptional services—without the complexity.

Freshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
Try it Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of QSdpR!

Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

Programming Language

C, Python, Unix Shell

Related Categories

Unix Shell Bio-Informatics Software, Python Bio-Informatics Software, C Bio-Informatics Software

Registered

2016-05-16