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  • gawbul Posted 2011-06-02
    An excellent and extremely powerful tool-kit for the analyses of ssu-rRNA sequence data. I have used it in the teaching of several metagenomics/bioinformatics practical projects at our university, as well as for my own personal projects. There is no competition, QIIME is simply the best software pipeline for this kind of work.
  • wern0122 Posted 2011-01-10
    Once you get past the learning curve, this is an extraordinarily powerful pipeline and tool set for processing and analyzing high-throughput 16S sequencing data. I use it on a daily basis; thanks QIIME developers!