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The QIIME project has moved to GitHub. You can now find us at http://github.com/qiime/. As always, you can find the QIIME website at http://www.qiime.org.
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User Reviews
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An excellent and extremely powerful tool-kit for the analyses of ssu-rRNA sequence data. I have used it in the teaching of several metagenomics/bioinformatics practical projects at our university, as well as for my own personal projects. There is no competition, QIIME is simply the best software pipeline for this kind of work.
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Once you get past the learning curve, this is an extraordinarily powerful pipeline and tool set for processing and analyzing high-throughput 16S sequencing data. I use it on a daily basis; thanks QIIME developers!