Download Latest Version pysces-0.9.5.tar.gz (1.8 MB)
Email in envelope

Get an email when there's a new version of Pysces

Home / pysces_cbm / tools
Name Modified Size InfoDownloads / Week
Parent folder
glpk-0.3.43-mingw-gmp-i7.win32-py2.6.md5 2012-07-31 76 Bytes
glpk-0.3.43-mingw-gcc46-gmp-i7.win32-py2.7.md5 2012-07-31 82 Bytes
glpk-0.3.43-mingw-gcc46-gmp-i7.win32-py2.7.exe 2012-07-31 738.3 kB
lp_solve_5.5_Py2.7-gcc45.md5 2012-07-31 64 Bytes
lp_solve_5.5_Py2.7-gcc45.zip 2012-07-31 326.9 kB
glpk-0.3.43-mingw-gmp-i7.win32-py2.6.exe 2012-04-05 738.4 kB
README.rst 2011-11-14 2.2 kB
COBRA2SBML2FBA.win32.md5 2011-11-14 60 Bytes
COBRA2SBML2FBA.win32.ZIP 2011-11-14 3.8 MB
Totals: 9 Items   5.7 MB 0

These tools are unofficial and mostly unsupported but feel free to use at your own risk

COBRA2SBML2FBA_.win32.zip

Windows program for converting COBRA style SBML into SBML2 with FBA annotation (http://precedings.nature.com/documents/4236/version/1)::
Use from a Windows terminal::
ConvertModels.exe <input_filename>.xml

A new file <input_filename>.converted.xml will be created, compare the files to see the differences!

Copyright (c) 2009-2012, Brett G. Olivier, Frank T. Bergmann All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

  • Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.
  • Redistributions in binary form must reproduce the above
    copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
  • Neither the name of the B.G. Olivier, F.T. Bergmann
    nor the names of any contributors may be used to endorse or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Brett G. Olivier, November 2011, Amsterdam

Source: README.rst, updated 2011-11-14