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Name Modified Size Downloads / Week Status
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README.txt 2010-12-30 1.3 kB 0
CHANGES.txt 2010-12-30 136.2 kB 0
PyPedal-2.0.1.tar.gz 2010-12-30 3.8 MB 0
PyPedal-2.0.1.zip 2010-12-30 3.9 MB 0
Totals: 4 Items   7.8 MB
PyPedal 2 CHANGELOG =================== CHANGES in PyPedal 2.0.1 (Vetinari) =================================== 12/30/2010 Wrapped a stray debugging message in pyp_nrm/inbreeding() so that it will only print when the debugging_messages option is set. 12/30/2010 An incorrect index was being used in pyp_nrm/inbreeding() to match-up COI with animal IDs when COI are read from an existing NRM. The procedure was looping from 0 to (number of animals - 1), but 1 was being subtracted from the index when reaching into the pedigree to assign the COI. This means that the COI for animal 0 (first in the pedigree) was being assigned to animal -1 (the last animal in the pedigree), the COI for animal 1 was being assigned to animal 0, etc. This bug affected any inbreeding calculations based on an attached NRM, regardless of the pedformat. 12/30/2010 Found a bug in pyp_nrm/inbreeding() that affects ASD pedigrees to which a NRM is attached at load time. When the COI are copied from the NRM to the results dictionary the wrong COI is being associated with an animal ID. 12/30/2010 Added a new flag, force, to pyp_nrm/inbreeding() to override the use of an attached NRM for finding COI. This is needed for debugging a possible problem with correctly mapping IDs in ASD pedigrees when NRM are attached.
Source: README.txt, updated 2010-12-30

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