proSeq

ProSeq ('Processor of sequences') is a package including GUI and command line programs to process and analyse DNA polymorphism data.

It allows one to open and save sequence data in over a dozen file formats (and convert between these formats). It shows sequence alignments in a graphical window and allows the user to edit, manipulate and analyse sequences in various ways.
Sequence analyses include DNA polymorphism and basic phylogenetic reconstruction (NJ only).
The program can also run coalescent simulations and generate and visualise phylogenies.

The main changes in Proseq4 compared to Proseq3:
- Multiplatform. Binaries available for Windows, Mac and Ubuntu.
- It is now a 64-bit program, which can handle larger datasets (genome-scale from multiple individuals).
- TreeViewer can show multiple phylogenies in densiTree-like style
- Command line tools (e.g vcf2fasta) for integration into pipelines

Disclamer: No warranty of any kind is provided - use at your own risk

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