In this paper, we present a linear programming model (ProteinLP) for protein inference, which is built on two simple probability equations. ProteinLP is implemented in Java and can run on any Java Virtual Machine (JVM) regardless of computer architecture. Since ProteinLP introduces linear programming to solve protein inference problem, the software uses a standard LP software package, Glpk for Java (v4.47).

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2012-03-28
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