Populationsentwicklung Files

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Recommended Projects

SimulaTE
SimulaTE allows to simulate arbitrary complex landscapes of transposable elements (TEs). Additionally reads may be simulated using the genomes of all indivdiuals in the population as template. Reads may be simulated using different sequencing technologies (PacBio, Illumina paired-ends) and strategies (sequencing individuals and pooled populations). SimulaTE will greatly aid in evaluating the suitability of different approaches for estimating TE abundance within populations and to test whether given genomic resources, such as a reference genome or a TE database (a fasta file containing consensus sequences of TEs), are suitable for TE identification. Manual https://sourceforge.net/p/simulates/wiki/Home/#manual Walkthrough https://sourceforge.net/p/simulates/wiki/Home/#walkthrough Validation https://sourceforge.net/p/simulates/wiki/Home/#validation
Avida Digital Life Platform
In Avida, evolution acts on populations of self-replicating computer programs. These "digital organisms" experience natural selection through random mutations and resource competition. See the project website for more information and bug tracking.
popoolation2
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences. PoPoolation2 requires next generation sequencing data of pooled genomic DNA (Pool-Seq). It may be used for measuring differentiation between populations, for genome wide association studies and for experimental evolution. Documentation: https://sourceforge.net/p/popoolation2/wiki/Main/
Express Engine
STEP (ISO 10303) development environment which supports the validation of STEP data populations via EXPRESS (ISO 10303-11) schemata and the transformation of STEP data populations from one schema to another via EXPRESS-X (ISO 10303-14) schemata.
mimicree2
Genome-wide forward simulations of evolving populations

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