Picard release 1.94
1 July 2013
- FixMateInformation.java: Eliminate extraneous open of SAM file.
- SplitVcfs.java: Include option STRICT, which is true by default. If STRICT, throw an exception if something other than a SNP or Indel is found. Otherwise ignore that event.
- FastqToSam.java: Allow for the ability to remove trailing /1s for unpaired reads in a FASTQ
- Illumina bug workaround: Parser for TileMetricsOutput.bin ignore will discard duplicate entries. (Previously, if duplicate entries were found, the parser could get confused and couldn't collate the tile data properly.)