Looking for the latest version? Download picard-tools-1.119.zip (51.8 MB)
Name Modified Size Downloads / Week Status
Parent folder
picard-tools-1.91.zip 2013-05-06 42.1 MB 0
README.txt 2013-05-06 1.0 kB 0
Totals: 2 Items   42.1 MB
Picard release 1.91 6 May 2013 - Have HttpUtils and HTTPHelper set URLConnection.setDefaultUseCaches(false) - Introduced new options on IlluminaBasecallsToSam and IlluminaBasecallsToFastq to optionally disable Illumina-style EAMSS filtering. - Disallow 0-length CIGAR element. - ExtractIlluminaBarcodes: Don't assert that basecalls directory is writable, just output directory, which may or may not be the same. - SamToFastq: Allow for interleaved fastq files. - Change to SeekableBufferedStream to implement skip() directly by either positioning ahead in the buffer or seek()ing instead of relying on InputStream.skip() which reads through the entire skip. - GenotypeLikelihoods.java: Bug fix when converting (double) GLs into integer PLs: code was saturating at Short.MAX_VALUE = 32767. This is an issue with large events or when very high depth where PLs will be incorrect and saturate to this value. - SamToFastq: Producing the right result if INTERLEAVE=false and SECOND_END_FASTQ is not null.
Source: README.txt, updated 2013-05-06

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