Picard release 1.80
19 November 2012
- Updated SamFileValidator to check for records that have no read group id, or that have a read group id that is not found in the header.
- FormatUtil.java: Bug fix: "-?" is now recognized as NaN
- Minor change to ProgressLogger to support things that are not SAMRecord.
- IntervalListTools.java: add padding to index portion of scattered directory names so that they are always 4 digits long
- SAMFileReader.java: Improve javadoc for queryMate to explain peculiar way it must be used.