Picard release 1.67
23 April 2012
- ReadStructure.java: Fix ArrayOutOfBounds exceptions when ReadStructure has a skip before its last ReadDescriptor
- Log.java: Added a synchronized block around series of writes to System.out so that messages won't get interleaved when multiple threads log simultaneously.
- Small changes to ExtractIlluminaBarcodes to allow the use of quality scores to perform more stringent barcode calling.
- ClippingUtility.java: Fix bug in which one overload of adapterTrimIlluminaPairedReads was ignoring minMatchBases and maxErrorRate arguments and using default values.