Looking for the latest version? Download picard-tools-1.119.zip (51.8 MB)
Name Modified Size Downloads / Week Status
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picard-tools-1.66.zip 2012-04-09 34.2 MB 0
README.txt 2012-04-09 996 Bytes 0
Totals: 2 Items   34.2 MB
Picard release 1.66 9 April 2012 - BlockCompressedInputStream.java: Fix long-standing bug in read() method in which reading a valid 0xff from the stream was indistinguishable from EOF. Fortunately this method is not used very much. Fix courtesy of Bob Handsaker. - CollectGcBiasMetrics.java: Improve error message about absence of SO:coordinate in header. - IlluminaBasecallsToSam.java: Initialize ADAPTERS_TO_CHECK to a mutable array so it can be changed on the command line. - Made the random seed truly optional in DownsampleSam. - Add program CheckIlluminaDirectory. - Fix multithreading bug in IlluminaBasecallsToSam. - Make SamToFastq work if there are no read groups in the input. - Add standard options -h, -H, --version to HTML doc. - Speed up SamFileHeaderMerger in cases where we have many collisions. - Added a IOUtil. newTempFile() method that defaults the amount of space needed free on the tmp filesystem. - Make CloseableIterators on BAM files idempotent on close().
Source: README.txt, updated 2012-04-09

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