Looking for the latest version? Download picard-tools-1.119.zip (51.8 MB)
Name Modified Size Downloads / Week Status
Parent folder
picard-tools-1.64.zip 2012-03-12 33.1 MB 0
README.txt 2012-03-12 1.2 kB 0
Totals: 2 Items   33.1 MB
Picard release 1.64 12 March 2012 - Modified MeanQualityByCycle so that it does not try to generate an R plot if there is no data in the metrics file. - IlluminaUtil.java: change delimitor for multiple-barcode concatenation from slash to hyphen. - CommandLineProgram.java: Adding documentation links * CommandLinePrograms now print web documentation link in Usage * The FAQ link is printed when exceptions are thrown - Fixed NPE in SAMReadGroupRecord.getRunDate(). - CollectAlignmentSummaryMetrics.java: Fix for problem where PF_ALIGNED_BASES AND PF_MISMATCH_RATE were being calculated on all aligned bases, not just PF. - IlluminaUtil.java: Added a set of "dual indexed" adapters. - IlluminaDataProvider and dependent classes (IlluminaBasecallsToSam, ExtractIlluminaBarcodes) will no longer load/copy files and data for skipped cycles - IlluminaDataProvider no longer parses position files to get tile/lane information. It get's this from any available parser (and therefore avoids unnecessary parsing of position files). - SamToFastq.java: Fix for bug whereby the FastqWriters were being close()'d multiple times if not outputting per read-group and multiple read groups were present in the input sam/bam file.
Source: README.txt, updated 2012-03-12

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