Looking for the latest version? Download picard-tools-1.119.zip (51.8 MB)
Name Modified Size Downloads / Week Status
Parent folder
picard-tools-1.63.zip 2012-02-27 33.1 MB 0
README.txt 2012-02-27 1.1 kB 0
Totals: 2 Items   33.1 MB
Picard release 1.63 27 February 2012 - CollectGcBiasMetrics.java: Make coordinate-sort requirement explicit. - SamPairUtil.java: Fix off-by-one error in computation of insert size; and then: Fixi a off-by-two bug introduced recently in calculation of insert size when read 1 has a higher mapped coordinate than read 2. - SequenceUtil.java: added areSequenceDictionariesEqual() - Implemented a tiny custom sublcass of GZIPOutputStream so that the compression level could be adjusted from the default compression level (5), and made it to that IoUtil.openFileForWriting() and friends that vector to our GZIP writing code override the default using Defaults.COMPRESSION_LEVEL which is settable via system property. - Added a new Defaults.BUFFER_SIZE settable from system property samjdk.buffer_size that replaces IOUtil.DEFAULT_BUFFER_SIZE. Default is still 128k. - Small performance tweak to how we identify adapter dimer in CollectAlignmentSummaryMetrics. - ExtractIlluminaBarcodes has been modified to support multi-threaded operation. - Add OutputFilePrefix option to BamToBfq and RunMaq
Source: README.txt, updated 2012-02-27

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

Sign up for the SourceForge newsletter:

No, thanks