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Name Modified Size Downloads / Week Status
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picard-tools-1.60.zip 2012-01-17 32.9 MB 0
README.txt 2012-01-17 705 Bytes 0
Totals: 2 Items   32.9 MB
Picard release 1.60 17 January 2012 - Modified ExtractIlluminaBarcodes to handle dual barcodes. Metrics file contains barcode read bases separate by slashes, barcode.txt files concatenate all the barcode read bases with no separator. Removed BUSTARD_DIR option, which has been deprecated in favor of BASECALLS_DIR. - Eliminate SamFileHeaderMerger.addIterator, and instead add another ctor that allows for passing iterators in the ctor. Use LinkedHashMap instead of ArrayList in SamFileHeaderMerger for speed. Patch courtesy of Matt Hanna. - FilteringIterator.java: assert that reads are in SortOrder.queryname when filtering pairs - SamToFastq.java: Added a little progress logging to SamToFastq.
Source: README.txt, updated 2012-01-17

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