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picard-tools-1.54.zip 2011-10-11 31.7 MB 11 weekly downloads
README.txt 2011-10-11 633 Bytes 11 weekly downloads
Picard release 1.54 11 October 2011 - Modify CollectRnaSeqMetrics.java to support multi-level metrics collection - CollectAlignmentSummaryMetrics.java: Guard against PCT_CHIMERAS denominator being 0 - Refactoring of IlluminaBaseCallsToSam - Remove upper limit on BAM record size. - CollectAlignmentSummaryMetrics.java: Added a bunch of IF statements to protect against divide by zeros. - Add bzip2 classes into picard jar. - Support IUPAC ambiguity codes in SAM and BAM. - Remove validation that requires that there be no CIGAR for unmapped read, because use of SAM for assembly has reads marked as unmapped that have CIGAR.
Source: README.txt, updated 2011-10-11