Picard release 1.48
20 June 2011
- Added support for Snappy compression of temporary files created with SortingCollection. This can reduce the size of these temporary files by ~50%, without a large cost in CPU time. See https://sourceforge.net/apps/mediawiki/picard/index.php?title=Using_Snappy_in_Picard for details.
- AbstractAlignmentMerger.java: Added some progress logging during the initial phase of MergeBamAlignment.
- CleanSam.java: Don't throw an exception if a read is unmapped.
- SequenceUtil.java: Add new overload of assertSequenceDictionariesEqual that reports filenames.