Picard release 1.39
2 February 2011
- FastqToSam.java: Added options to set the sequencing center, PI, DS, DT tags in read group.
- CollectGcBiasMetrics.java: Fixed a bug whereby windows from a reference sequence were ignored if the reference sequence had no reads aligned to it.
- CollectGcBiasMetrics; When counting errors in GC window, add # of inserted bases and # of deleted bases to # of mismatched bases.
- CommandLineParser.java: Eliminate requirement that fields annotated with @Option and @Usage be public.