PhageTerm

Determining Bacteriophage Termini and Packaging using NGS data.

Brought to you by: jgarneau, mmonot

Downloads: 8 This Week

Last Update: 2021-09-14

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NEW VERSION (PhageTermVirome) AVAILABLE AT :

(To access the lightest version)
https://gitlab.pasteur.fr/vlegrand/ptv/-/releases

This new version is now compatible with PYTHON3 and now allows the analysis of multiple phage genomes/contigs (multifasta) in a single analysis.

However, like before, you can still perform the analysis on a single phage genome/contig.

Description : PhageTerm and PhageTermVirome are a theoretical and statistical framework to analyze DNA termini and phage packaging mechanisms using next-generation sequencing data.

A direct graphical interface is still available as a Galaxy wrapper version at https://galaxy.pasteur.fr (Single contig input version only).

Project Samples

Biases in the number of reads starting at natural DNA ends.

Sequence coverage at termini position.

Detection of Mu-like phages.

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Registered

2017-01-13

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