PBSuite Files

Software for Long-Read Sequencing Data from PacBio

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Name	Modified	Size	InfoDownloads / Week
archives	2014-05-13		0
PBSuite_15.8.24.tgz	2015-09-01	5.9 MB	1
PBSuite_15.2.20.p1.tgz	2015-02-26	3.7 MB	0
PBSuite_14.9.9.tgz	2014-09-10	2.6 MB	0
PBSuite_14.7.14.tgz	2014-07-14	2.7 MB	0
PBSuite_14.6.24.tgz	2014-06-25	2.7 MB	0
PBSuite_14.5.13.tgz	2014-05-13	2.7 MB	0
Totals: 7 Items		20.2 MB	1

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Recommended Projects

Cerulean: Hybrid Genome Assembler
Cerulean Hybrid Genome Assembler v0.1 Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. I am not able to maintain and update the software due to change in research funding. However I will be happy to answer any queries or provide support and comments if you are interested in extending this algorithm. The method is fully described in Deshpande, V., Fung, E. D., Pham, S., & Bafna, V. (2013). Cerulean: A hybrid assembly using high throughput short and long reads. arXiv preprint arXiv:1307.7933. http://arxiv.org/abs/1307.7933
MIRA
MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
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PBSuite Files

Software for Long-Read Sequencing Data from PacBio

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