PBSuite Icon

PBSuite

Software for Long-Read Sequencing Data from PacBio

4.5 Stars (4)
83 Downloads (This Week)
Last Update:
Download PBSuite_15.8.24.tgz
Browse All Files

Screenshots

Description

This currently hosts two projects created and maintained by Adam English.

PBJelly - the genome upgrading tool.
PBHoney - the structural variation discovery tool

Both are contained within the PBSuite code found in downloads.

----- PBJelly -----
Read The Paper
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768

PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes.

----- PBHoney -----
Read The Paper
http://www.biomedcentral.com/1471-2105/15/180/abstract

PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.

PBSuite Web Site

Categories

Bio-Informatics

License

BSD License

Features

  • Genome Assembly
  • Genome Upgrade
  • Structural Variation
  • Assembly Evaluation

KEEP ME UPDATED

User Ratings

★★★★★
★★★★
★★★
★★
3
0
1
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 2 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5
Write a Review

User Reviews

There are no 1 star reviews.

Additional Project Details

Intended Audience

Science/Research

Programming Language

Python

Registered

2012-05-21

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

Sign up for the SourceForge newsletter:

No, thanks
Screenshots can attract more users to your project.
Features can attract more users to your project.