PASA - Browse /misc at SourceForge.net

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Name	Modified	Size	InfoDownloads / Week
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pasa_tutorial_2006.pdf	2012-05-01	3.5 MB	0
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PASA is now hosted at pasapipeline.github.io

Source: README.txt, updated 2015-02-23

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Recommended Projects

EVidenceModeler (EVM)
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RNASeq-MATS
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. MATS handles replicate RNA-Seq data from both paired and unpaired study design. More information can be found at http://rnaseq-mats.sourceforge.net.
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PASA Files