parastructure

parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS.
A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run.
A patch for the structure (ran.c) is also provided in order to correct the generation of the seed number.

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Linux

User Interface

Console/Terminal

Programming Language

C, Perl, Unix Shell

Related Categories

Unix Shell Bio-Informatics Software, Perl Bio-Informatics Software, C Bio-Informatics Software

Registered

2013-07-25

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