PANDA is a comprehensive and flexib tool for quantitative proteomics data analysis, which is developed based on our solid foundations in quantitative proteomics for years. Several novelties have been implemented in it. First, we implement the advantage algorithms of LFQuant (Proteomics 2012, 12, (23-24), 3475-84) and SILVER (Bioinformatics 2014, 30, (4), 586-7) into PANDA. Second, we consider the state-of-art concept of quantification reliability in this quantitative workflow. On the levels of spectra, peptides and proteins, PANDA works out a few quantitative filters and new scores for quantification confidence. Third, PANDA is designed for processing proteomics big data in parallel.

Features

  • Flexible
  • Efficiency
  • High accuracy
  • High sensitivity

Project Samples

The user-friendly interfaces of PANDA for quantification parameter setting The quantification methods supported by PANDA

Project Activity

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Categories

Algorithms, Bio-Informatics, Data Visualization, Data Analytics, Big Data

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Additional Project Details

Operating Systems

Windows

Languages

English, Chinese (Simplified)

Intended Audience

Science/Research, End Users/Desktop

Programming Language

C#, C++, S/R

Related Categories

C# Algorithms, C# Bio-Informatics Software, C# Data Visualization Software, C# Data Analytics Tool, C# Big Data Tool, C++ Algorithms, C++ Bio-Informatics Software, C++ Data Visualization Software, C++ Data Analytics Tool, C++ Big Data Tool, S/R Algorithms, S/R Bio-Informatics Software, S/R Data Visualization Software, S/R Data Analytics Tool, S/R Big Data Tool

Registered

2016-07-30
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