OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method. It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs sequence alignment and deposits sequences into a fasta sequence file for downstream molecular evolutionary analysis.

Project Activity

See All Activity >

Categories

Bio-Informatics

License

GNU Library or Lesser General Public License version 3.0 (LGPLv3)

Follow OrthoRBH

OrthoRBH Web Site

Other Useful Business Software
APIs for the next generation of business text messaging Icon
APIs for the next generation of business text messaging

For companies that need a reliable messaging API provider

Get your customers’ messages where they need to go with 99%+ deliverability. Telgorithm’s API automates A2P compliance & message management for faster, easier, & more reliable messaging, enabling you to offer the best service to your customers.
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of OrthoRBH!

Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research, End Users/Desktop

Programming Language

Unix Shell

Related Categories

Unix Shell Bio-Informatics Software

Registered

2012-07-09