OrthoMCL

Brought to you by: fchenustc

Last Update: 2013-03-14

Get an email when there's a new version of OrthoMCL

Stand-alone version of OrthoMCL is programmed in PERL, runs in UNIX-like systems. It uses the Markov Clustering Algorithm (MCL) to perform a graph clustering of protein orthologs from multiple eukaryotic genomes.

Project Activity

See All Activity >

Follow OrthoMCL

OrthoMCL Web Site

Other Useful Business Software

MongoDB Atlas runs apps anywhere

Deploy in 115+ regions with the modern database for every enterprise.

MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.

Start Free

Rate This Project

User Reviews

Be the first to post a review of OrthoMCL!

Additional Project Details

Registered

2005-05-27

Report inappropriate content

Recommended Projects

Opera
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads. An updated version called OPERA-LG has...
PocketAnalyzerPCA
PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal Component Analysis and clustering. This enables visualization and analysis of pocket conformational distributions of large sets of protein structures.
JCVI VIGOR
VIGOR (Viral Genome ORF Reader) is a perl application to predict protein sequences encoded in viral genomes. VIGOR determines the protein coding sequences by sequence similarity searching against curated viral protein databases. Please see the wiki to see list of all supported...
Dinucleotide signatures
This project contains a set of files (Perl, Java, and an R package) used to perform analysis of oligonucleotide signatures in metagenomes and genomes.
Python Cron - Great Cron for Windows!
This is a clone of the well-known cron job scheduler for the unix flavored operating systems. The implementation is platform-independant, robust and simple. It includes a stand alone package for Windows that doesn't require Python.