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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| theoretical_masses.txt | 2014-08-21 | 8.8 MB | |
| ecoli.fasta | 2014-08-21 | 1.8 MB | |
| additional_tabular_mapping.csv | 2014-08-21 | 136 Bytes | |
| 20100219_SvNa_SA_Ecoli_picked.mzML | 2014-08-21 | 366.7 MB | |
| additional_tabular_data.csv | 2014-08-21 | 129 Bytes | |
| Totals: 5 Items | 377.3 MB | 0 | |
Example 3: Quality control for proteomics experiments
In this example we demonstrate how the combination of OpenMS and KNIME can be used to generate informative quality reports based for an LC-MS/MS experiment. The workflow is based on the one presented in the origianl qcML paper.
The folder sample_data folder contains all data sets required to run the workflow. Please note that some of the files have to be given inside the Meta nodes.
Reference
Walzer M., Pernas L. E., Nasso S., et al. qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments. Mol Cell Proteomics 2014 13: 1905-1913. doi:10.1074/mcp.M113.035907