Home / newblermetrics
Name Modified Size Downloads / Week Status
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newblermetrics1.2.pl 2012-09-27 8.4 kB 0
readme.txt 2012-09-26 1.0 kB 0
newblermetrics1.1.pl 2011-09-06 8.3 kB 0
newblermetrics1.0.pl 2011-09-06 7.9 kB 0
Totals: 4 Items   25.7 kB
Version 1.2, September 2012 Output: a tab-separated file from summarizing the data in a 454NewblerMetrics.txt file from a newbler assembly Tested on newbler v 2.3, 2.5.3 and 2.6 (not extensively) on both shotgun, shotgun + paired end and transcriptome assemblies NOTE does not work yet on a file from a mapping project (gsMapper, runMaping) by Lex Nederbragt Contact lex.nederbragt@bio.uio.no run as newblermetrics.pl 454Newblermetrics.txt newblermetrics.pl /path/to/454Newblermetrics.txt or perl newblermetrics.pl 454Newblermetrics.txt perl newblermetrics.pl /path/to/454Newblermetrics.txt See also: http://contig.wordpress.com/2011/05/09/a-script-for-converting-the-454newblermetrics-txt-file-to-a-tab-separated-file/ License: GNU General Public License, version 3 (GPLv3) Release notes: version 1, May 2011 first release Version 1.1, September 2011 fixed change from pairDistanceAvg to computedPairDistanceAvg in newbler 2.6 current version: version 1.2, September 2012 fixed a small erroneous tab in the output
Source: readme.txt, updated 2012-09-26

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