Home / newblermetrics
Name Modified Size InfoDownloads / Week
Parent folder
newblermetrics1.2.pl 2012-09-27 8.4 kB
readme.txt 2012-09-26 1.0 kB
newblermetrics1.1.pl 2011-09-06 8.3 kB
newblermetrics1.0.pl 2011-09-06 7.9 kB
Totals: 4 Items   25.7 kB 0
Version 1.2, September 2012

Output: a tab-separated file from 
summarizing the data in a 454NewblerMetrics.txt file
from a newbler assembly
Tested on newbler v 2.3, 2.5.3 and 2.6 (not extensively)
on both shotgun, shotgun + paired end and transcriptome assemblies
NOTE does not work yet on a file from a mapping project
(gsMapper, runMaping)

by Lex Nederbragt
Contact lex.nederbragt@bio.uio.no

run as
newblermetrics.pl 454Newblermetrics.txt
newblermetrics.pl /path/to/454Newblermetrics.txt

or
perl newblermetrics.pl 454Newblermetrics.txt
perl newblermetrics.pl /path/to/454Newblermetrics.txt


See also:
http://contig.wordpress.com/2011/05/09/a-script-for-converting-the-454newblermetrics-txt-file-to-a-tab-separated-file/
License: GNU General Public License, version 3 (GPLv3)

Release notes:
version 1, May 2011
	first release
Version 1.1, September 2011
	fixed change from pairDistanceAvg to computedPairDistanceAvg in newbler 2.6
current version:
version 1.2, September 2012
	fixed a small erroneous tab in the output
Source: readme.txt, updated 2012-09-26