| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| newblermetrics1.2.pl | 2012-09-27 | 8.4 kB | |
| readme.txt | 2012-09-26 | 1.0 kB | |
| newblermetrics1.1.pl | 2011-09-06 | 8.3 kB | |
| newblermetrics1.0.pl | 2011-09-06 | 7.9 kB | |
| Totals: 4 Items | 25.7 kB | 0 | |
Version 1.2, September 2012 Output: a tab-separated file from summarizing the data in a 454NewblerMetrics.txt file from a newbler assembly Tested on newbler v 2.3, 2.5.3 and 2.6 (not extensively) on both shotgun, shotgun + paired end and transcriptome assemblies NOTE does not work yet on a file from a mapping project (gsMapper, runMaping) by Lex Nederbragt Contact lex.nederbragt@bio.uio.no run as newblermetrics.pl 454Newblermetrics.txt newblermetrics.pl /path/to/454Newblermetrics.txt or perl newblermetrics.pl 454Newblermetrics.txt perl newblermetrics.pl /path/to/454Newblermetrics.txt See also: http://contig.wordpress.com/2011/05/09/a-script-for-converting-the-454newblermetrics-txt-file-to-a-tab-separated-file/ License: GNU General Public License, version 3 (GPLv3) Release notes: version 1, May 2011 first release Version 1.1, September 2011 fixed change from pairDistanceAvg to computedPairDistanceAvg in newbler 2.6 current version: version 1.2, September 2012 fixed a small erroneous tab in the output
