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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| MAF.zip | 2025-07-15 | 54.9 kB | |
| Totals: 1 Item | 54.9 kB | 1 | |
Version history --- version : 2025-07-15 dependency bugs in R import scripts solved added two missing R scripts --- version : 2025-07-09 a new bash script based on 31_se_mir.sh from Karthik Nair optimized for large number of samples and condensed to a core workflow in MAF/bin/mir_optimized/31_mirna_core_optimized.sh --- version : 2025-07-02 bash scripts adjusted, bugs removed bash script version changed from 30 to 31 in some cases R script : qname_srv.uni.R : bug removed samtools markdup : removed from the options as it assumes the postion #8 of a colon separated qname string it needs more efforts to be re-integrated again bbmap alignment call adjusted to not generate an extended and therefore for the workflow wrong qname --- version : 2025-06-17 Publication Zhao X, Korsching E. Evaluating the Effectiveness of Various Small RNA Alignment Techniques in Transcriptomic Analysis by Examining Different Sources of Variability Through a Multi-Alignment Approach. Methods and Protocols. 2025; 8(3):65. https://doi.org/10.3390/mps8030065