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EDNA

Energy Based Multiple Sequence Alignment (MSA) for Binding Sites

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Description

Multiple Sequence Alignment for Transcription Factor Binding Sites using Di nucleotides dependencies and relying on Free Interaction energies between neighbouring DNA bases to stabilise substitution energy of the alignment.

http://www.ncbi.nlm.nih.gov/pubmed/23990411

EDNA Web Site

Features

  • Java based multiple sequence alignment of binding sites

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User Reviews

  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    msa-edna is fast and easy to use

    Posted 09/19/2012
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Additional Project Details

Intended Audience

Science/Research

Programming Language

Java

Registered

2012-05-09

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